PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038161

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 221aa MW: 24121.4 Da PI: 4.3143

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038161	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.7e-06	58	95	3	40
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 k ++tkeq++eLe++F ++ y ++++ ++klgL+ Lus10038161 58 KCYRHTKEQIKELESFFDECAYSDEKRLNVFSRKLGLE 95 55679*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-8	37	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.38E-6	40	97	IPR009057	Homeodomain-like
CDD	cd00086	2.17E-4	56	94	No hit	No description
SuperFamily	SSF55961	1.12E-5	83	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEKTCELNIP TDADAQQVDV VVVNLVERLD VKPELGSNMN QLGGSSHDEM QQHTSKRKCY 60 RHTKEQIKEL ESFFDECAYS DEKRLNVFSR KLGLEIMQQY GGSPGPVLIL QEIWNDESSS 120 LMVYAPVDMR SMQMVMNGGD TTYVALLPSG LAIVPDNNSG VGSGDANGIG SSGGCIMTVG 180 FQILVSSEVT RTSVEIMDQA VSCTIQRIKD IFQILMVDSA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10038161

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10038161	1e-162	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	9e-28	homeodomain GLABROUS 7

Link Out ? help Back to Top
Phytozome	Lus10038161