PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038189
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 258aa    MW: 29215.6 Da    PI: 8.9145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038189genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-1610105199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ffk+l++++  ++  + +pkkfa+eh  +   s +++l+ ++g+ W v+l  +   ++  ++++kGW++F +    + g f++F+l ++s+f  +v +
  Lus10038189  10 FFKILLQHNIEAN-YMLIPKKFAKEHCRD--LSNQIILKVPNGEAWPVELVRDELAKGglVWFGKGWQKFSERYCFRHGHFLLFELLHNSSF--LVLI 102
                  8899977666666.5***********444..5567***************8744444456****************************9*99..9999 PP

                  E-S CS
           B3  97 frk 99 
                  f++
  Lus10038189 103 FNR 105
                  987 PP
2B351.61.7e-161792551797
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   +pkkf+e +   +++s +++    +g++W vkl++ ++ + + l++GW +F+++n+Lk+gD+++F+l + ++f  +v+++
  Lus10038189 179 AVPKKFVEMYV--TTSSEKMVELKFDGETWPVKLKIYQQASYCQLSEGWVQFARDNNLKAGDTCTFELASATSF--NVHIY 255
                  58*****9995..345556666778*********7777777799***********************9988888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-237105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-228106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-198104No hitNo description
PROSITE profilePS5086313.0989106IPR003340B3 DNA binding domain
SMARTSM010191.1E-1610106IPR003340B3 DNA binding domain
PfamPF023622.6E-1310105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19162256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493163257IPR003340B3 DNA binding domain
SMARTSM010193.8E-9168257IPR003340B3 DNA binding domain
CDDcd100176.20E-19173256No hitNo description
SuperFamilySSF1019367.06E-19179256IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-14180256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSPWGGPRF FKILLQHNIE ANYMLIPKKF AKEHCRDLSN QIILKVPNGE AWPVELVRDE  60
LAKGGLVWFG KGWQKFSERY CFRHGHFLLF ELLHNSSFLV LIFNRTAAEI GYSKQDWELA  120
QTETMLESSD AATDVAGKDE NLASTKKTPV VVSKKLTSQR ASKSSAAIVN VLPSFKKPAV  180
PKKFVEMYVT TSSEKMVELK FDGETWPVKL KIYQQASYCQ LSEGWVQFAR DNNLKAGDTC  240
TFELASATSF NVHIYRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100381890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.17e-20B3 family protein