PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038270
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 217aa    MW: 23319.9 Da    PI: 4.4561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038270genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-164796255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr ++ +g++v+eIr p++   + r++lg+f tae+Aa+a++ a+++++g
  Lus10038270 47 IFRGVRKRS-WGKFVSEIRQPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 96
                 59****888.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.06E-3046106No hitNo description
PfamPF008473.0E-114696IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3047105IPR001471AP2/ERF domain
SMARTSM003804.5E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-2047105IPR016177DNA-binding domain
PROSITE profilePS5103222.35247104IPR001471AP2/ERF domain
PRINTSPR003677.2E-104859IPR001471AP2/ERF domain
PRINTSPR003677.2E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MPEKYTTSTT TTTTTTTSPS SSSSSSSNRK RPRNDGDGAQ QQNVQPIFRG VRKRSWGKFV  60
SEIRQPRKKS RIWLGTFPTA EMAARAHDVA ALSIKGDAAI LNFPHLAASL PRPASLSPPD  120
IQEAAAKAAA MVDLDSSSSA STALIAGEEE EEELGEIVEL PNIEGSLLFE PEFGVNELVE  180
FDSSAECQQQ LGWVYYCYPP SLPAGLDLDG SLLWAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20481051573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470173.15e-55PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2QNZ71e-53A0A0D2QNZ7_GOSRA; Uncharacterized protein
STRINGLus100382701e-157(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.15e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]