PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038306
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 250aa    MW: 27822.8 Da    PI: 7.1804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038306genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1262108354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h e+Er+RR+riNs +++Lr+llP a      K++Ka+ L ++v  +k+L
  Lus10038306  62 KNHCEAERKRRARINSHLDTLRTLLPDA-----HKMDKASLLAEVVSNLKEL 108
                  589************************9.....6**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.69159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.67E-1162110No hitNo description
PfamPF000102.6E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1363133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1263116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEEPNSTILV RKSCHMEGNY CDGMGSSSAL VLDGERGELV EASVVRVEKK EVAHERSTLA  60
LKNHCEAERK RRARINSHLD TLRTLLPDAH KMDKASLLAE VVSNLKELKR NAAEASEGIF  120
MPMDVDELKV EQELEGPPYL IKASLCCNFK PGILSHLRTA IETLQLSLMG AETATLEGRM  180
KNVFVIASRR QEEHHEHTTK GHHQLLASSV HHAFRTILDN FSASEEFLLK SALPNKKRRI  240
SAFDGSFSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038306
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744480.0JX174448.1 Linum usitatissimum clone LuBAC395P20, complete sequence.
GenBankKX0186230.0KX018623.1 Linum usitatissimum clone 44E4_FAD3A_M5791_28, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325576.17e-93transcription factor bHLH30
TrEMBLA0A172MLF80.0A0A172MLF8_LINUS; Uncharacterized protein
STRINGLus100383060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-27bHLH family protein