PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038395
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 295aa    MW: 33218.9 Da    PI: 6.5843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038395genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-162269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l + ++  G ++W+++++  g+ R++k+c++rw++yl
      Lus10038395 22 KGLWSPDEDERLFHFITSNGHPSWSSVPKLAGLQRCGKSCRLRWLNYL 69
                     678*******************************************97 PP
2Myb_DNA-binding53.74.9e-1775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T  E+ ++vda+++lG++ W+ Ia++++ gRt++++k++w++y
      Lus10038395  75 RGGFTHKEERIIVDAHRMLGNK-WAQIAKHLP-GRTDNEIKNFWNSY 119
                      7889******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-221372IPR009057Homeodomain-like
PROSITE profilePS5129416.0471769IPR017930Myb domain
SuperFamilySSF466891.09E-2620116IPR009057Homeodomain-like
SMARTSM007171.9E-92171IPR001005SANT/Myb domain
PfamPF002492.9E-132269IPR001005SANT/Myb domain
CDDcd001673.44E-82569No hitNo description
PROSITE profilePS5129426.06970124IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2573125IPR009057Homeodomain-like
SMARTSM007172.2E-1574122IPR001005SANT/Myb domain
PfamPF002492.8E-1575119IPR001005SANT/Myb domain
CDDcd001673.50E-1178120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQRPKTTTTT GHKCCTKQKV RKGLWSPDED ERLFHFITSN GHPSWSSVPK LAGLQRCGKS  60
CRLRWLNYLR PDLKRGGFTH KEERIIVDAH RMLGNKWAQI AKHLPGRTDN EIKNFWNSYI  120
KKKLISQGID PNTHNQLQSA TTSSYSSSTS SLIFNVAPNK KQTTSSNVDV LPSIFFPFNV  180
DYDDTNIHPL IPPTTNRVGD HEITDNGLWD YGPGLESNEN VVYHQVQPTF SLDSKSDVKF  240
QGDGSVEWEM NDGSLEGSNL FDFDYGESAT NHPAGLEEII ATNYSGNDEL WDVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29221247108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065967.15e-78myb-related protein 308
TrEMBLA0A067L7B11e-76A0A067L7B1_JATCU; MYB family protein
STRINGLus100383950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-69myb domain protein 67