PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038432
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 261aa    MW: 28948.8 Da    PI: 4.6757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038432genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.5e-07142186655
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + + r+RR+ri  + +eL +l+P  +      K++ ae+ + A +Y++ Lq
  Lus10038432 142 SVAARQRRRRISGKTQELGKLIPGgN------KMNTAEMFQAAANYVRFLQ 186
                  5677*******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-11134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-9134190No hitNo description
Gene3DG3DSA:4.10.280.101.5E-9135190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.62136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-8142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALSFCSSYP EYQLPFLTTE EVSDFDPDSL LLPFAHDFED DGAAAGAQLQ LDSDGLISLS  60
PTEAATFPLN ELNPKRQRTF PANYDHYCYN PLPWELNILQ HGYPNFPDLI IPAVAAPVMP  120
QLETPAGDNA KAEKKQSLSA QSVAARQRRR RISGKTQELG KLIPGGNKMN TAEMFQAAAN  180
YVRFLQCQIS ILQLMGGDDQ SPSPPNELQT ILASHRIQHK LCSERSCLVP RELLLSLVNR  240
PELQSVTEEI DELLLVKKEQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100384320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-24bHLH family protein