PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038448
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 259aa    MW: 28352.7 Da    PI: 8.6196
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038448genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.76.9e-32160216158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh hAl+R+Rg+gGrF
  Lus10038448 160 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHIHALKRARGCGGRF 216
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.6E-36158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.163159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-26161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.2E-23162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.2E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLSAAASAVF SFEEDGGFDF GSLLILFGLH FVVLYRPPGW PSCFRESLMD SSVHDLSENN  60
KGQDEQQKTP EHKIQSPFPA ATMAHSAVAT GNIPFSTAPL LGAGQVPQGY PYPDPYYRSI  120
FPPYDSQQYA PQPYGGQPMV HVQLMGLQQG GLPLPSDAVE EPVFVNAKQY HGILRRRQSR  180
AKAESENKAI KSRKPYLHES RHIHALKRAR GCGGRFLNSK KNEDKQDANS NTASGDKSES  240
NINLNSDRSD TATSKGKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20159223165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536076.11e-101nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP11e-65NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A067GIN46e-99A0A067GIN4_CITSI; Uncharacterized protein
TrEMBLA0A067GIX87e-99A0A067GIX8_CITSI; Uncharacterized protein
STRINGLus100384480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-56nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]