PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038449
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 873aa    MW: 95351.1 Da    PI: 6.6655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1842100357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lus10038449  42 KYVRYTPEQVEALERVYAECPKPTSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 100
                  6789*****************************************************97 PP
2START1686.3e-531923992204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+ +  W ++++ +e+  vi +g  g+++l++++
  Lus10038449 192 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLVSLEPM-KVAEILKERTSWYRDCRFVEMASVIPTGngGTIELIYMQ 288
                  68999*****************************************************.7777777777***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  + a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p    ss++vRa++lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + 
  Lus10038449 289 TFAPTTLAAaRDFWTIRYTTTLEDGSLVICERSLTSSTGGPPgppSSGFVRAKMLPSGYLIRPCDGGGSIIHIVDHVDLDPSSVPEVLRPLYESSKII 386
                  *************************************99888899***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k+++a+l++ +
  Lus10038449 387 AQKMTLAALRHIR 399
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-1926100IPR009057Homeodomain-like
PROSITE profilePS5007115.64537101IPR001356Homeobox domain
SMARTSM003891.8E-1539105IPR001356Homeobox domain
PfamPF000466.1E-1642100IPR001356Homeobox domain
CDDcd000862.50E-1642102No hitNo description
SuperFamilySSF466893.94E-1642104IPR009057Homeodomain-like
CDDcd146861.86E-694133No hitNo description
PROSITE profilePS5084826.833182410IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-20190383IPR023393START-like domain
SMARTSM002342.4E-49191401IPR002913START domain
SuperFamilySSF559612.2E-34192403No hitNo description
PfamPF018521.3E-50192399IPR002913START domain
SuperFamilySSF559616.46E-7439523No hitNo description
SuperFamilySSF559616.46E-7551624No hitNo description
PfamPF086701.5E-48727871IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MALSMYHNNN NTNQLNNEGG LMLLNKNHHH NQQQQQQMDT SKYVRYTPEQ VEALERVYAE  60
CPKPTSLKRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL  120
LMEENDRLQK QVSHLVYDNG FMRQQLHSGS ATATDNSCES VVMSGQQQQQ QQNPSSQHSQ  180
RDANNPAGLL AIAEETLAEF LSKATGTAVD WVQMIGMKPG PDSIGIVAVS RNSSGVAARA  240
CGLVSLEPMK VAEILKERTS WYRDCRFVEM ASVIPTGNGG TIELIYMQTF APTTLAAARD  300
FWTIRYTTTL EDGSLVICER SLTSSTGGPP GPPSSGFVRA KMLPSGYLIR PCDGGGSIIH  360
IVDHVDLDPS SVPEVLRPLY ESSKIIAQKM TLAALRHIRQ IAQESSGEIQ YGGGRQPAVL  420
RTFSQRLCRG FNDAVNGFAD DGWSLLSGDG VDDVTIAINS SPNKVPGSQY NGMFPTFGGG  480
VLCARASMLV QNVPPALLVR FLREHRSEWA DCAVDAYSAA CLKSSPYAVP CGRPGGFPSS  540
QVILPLAHTV EHEEFLEVVR LEAQAFSPDE MALARDMYLL QLCSGVDENA FGACAQLVFA  600
PIDESFADDA PLLPSGFRVI PLDSKADGHG ATRTLDLAST LEVGAGGGTR AAAQSDSNGH  660
NLRSVLTIAF QFSFENHLRD NVAAMARQYV RSVVASVQRV ATAIAPSRIG AQVGGGKSLP  720
GTPEAQTLAR WIYCSFRAHT GRDLFNGDPE SGDALLKQLW HNSDSIMCCS LKTNASPVFT  780
FANQAGLDML ETTLVALQDI MLDKILDEAG RKILFSEFSK IMHQGYAYLP SGVCVSSMGR  840
TVSYDQAIAW KVVNDDGSNH CLAFMFVNWS FM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616343.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2C9VN670.0A0A2C9VN67_MANES; Uncharacterized protein
STRINGLus100384490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]