PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038463
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family S1Fa-like
Protein Properties Length: 111aa    MW: 12775 Da    PI: 10.7501
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA70.91.9e-2244110870
         S1FA   8 akGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrk....kkPvskkklkreklkqGvavPGe 70 
                  +     G++v+ +v glll+f+vgny+ly ya ++    k    kk vskkk+kre+lkqG+ vPG+
  Lus10038463  44 SNSSRQGMVVFGIVVGLLLLFVVGNYLLYSYATRQSKNNKkmmiKKAVSKKKMKRERLKQGIFVPGD 110
                  555667**************************98777666345579*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.2E-2048110IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MDLDEFVSWT PEKPKRTYFI RNGHMGRDKN GKMIIRENED DVQSNSSRQG MVVFGIVVGL  60
LLLFVVGNYL LYSYATRQSK NNKKMMIKKA VSKKKMKRER LKQGIFVPGD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100384631e-75(Linum usitatissimum)