PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038480
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 193aa    MW: 21819.5 Da    PI: 10.1426
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038480genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.58.2e-172281357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++t+eq+ +L el+++  r+ +a+++++++++l    +++ ++V++WFqN++a++++
  Lus10038480 22 SRWCPTPEQVMILGELYRSgVRTANASHIQRITAHLsmygKIEGKNVFYWFQNHKARDRQ 81
                 7*****************99*************************************996 PP
2Wus_type_Homeobox112.91.6e-362082264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+PtpeQ++iL ely+sG+rt n+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk
        Lus10038480 20 ASSRWCPTPEQVMILGELYRSGVRTANASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQK 82
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-81685IPR009057Homeodomain-like
SMARTSM003890.00431986IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-42281IPR009057Homeodomain-like
PfamPF000461.5E-142281IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSPVAASGTV LAASPTNSSA SSRWCPTPEQ VMILGELYRS GVRTANASHI QRITAHLSMY  60
GKIEGKNVFY WFQNHKARDR QKLRRKLIKQ LHQHQHLPSY DHHQNQYSTN LINNNSFLLN  120
YFGYAPTPSH PPPHRLLHQE GRFGVERGAS SSSQVIVERV EANSNGYDDD KQQPMIKTLQ  180
LFPVKSTNLK ED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666132.17e-47WUSCHEL-related homeobox 3-like
TrEMBLA0A059D5E32e-43A0A059D5E3_EUCGR; Uncharacterized protein
TrEMBLA0A1Q3BTT37e-44A0A1Q3BTT3_CEPFO; Homeobox domain-containing protein
STRINGLus100384801e-143(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-39WOX family protein