PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038512
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 544aa    MW: 58667.1 Da    PI: 7.7573
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038512genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.12.3e-361072712132
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ssssa 70 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                             +++sa
  Lus10038512 107 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAISELPSLnasfpdipkqyggdekrstntttggggeqGFDSA 204
                  689*************************************************************9999999999999998888777777766655555 PP

          TCP  71 sec..eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmri 132
                   +   e++++++++s+ +++ + +++a+s +s++s+ s l+l++     sr kar rare+ + k + 
  Lus10038512 205 -DLelEEGEHNNNQSHLQQQLSLSKSACSCNSETSKGSGLSLSRsdvrVSRVKARDRAREKAAAKEKD 271
                  .3345777777777777777777777777777777777888887434456677777777765555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-41108271IPR005333Transcription factor, TCP
PROSITE profilePS5136931.632109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.942251270IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEVEDLHQTQ PPCKFSRIGN GGRSDNSKIG TTNGVLGGGD HHHHLRQFQA DTEEDGGEIK  60
MSLCNTPIGT GPIVASAADG VEGPNSTTGN RLRGWHHSRI IRVSRASGGK DRHSKVWTSK  120
GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA ADAISELPSL NASFPDIPKQ  180
YGGDEKRSTN TTTGGGGEQG FDSADLELEE GEHNNNQSHL QQQLSLSKSA CSCNSETSKG  240
SGLSLSRSDV RVSRVKARDR AREKAAAKEK DKDPNVHHRN HLSNTMSQNS TFTELLTGGI  300
GNTTTTAPPT TTSSPSGNSE VNLFHKTAAT AKTWPSTAMD YFGPGLLGPP SSSRHSQHQH  360
HSPSGFLGQI QMPQGIPQFN LSTGGENTHN HNHNHNHHHQ QHHHHQEQQQ LQLQHFPFVS  420
DYLMPVAATS TQGGQQHHQG VDYNLNFTVS YSGLAGFNRG TLQSNSSPSP SPSLVLPQQL  480
QQRFPSHIDG SSATHLPFFI GGGAAGAPPP LENHNHLFPS GLQLCYGDGS SSRHSDQKGK  540
GGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-24114168155Putative transcription factor PCF6
5zkt_B5e-24114168155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306852.11e-160transcription factor TCP2-like
RefseqXP_012072140.11e-160transcription factor TCP2-like isoform X1
RefseqXP_012072141.11e-160transcription factor TCP2-like isoform X1
RefseqXP_012072142.11e-160transcription factor TCP2-like isoform X1
RefseqXP_012072143.11e-160transcription factor TCP2-like isoform X1
RefseqXP_020534893.11e-160transcription factor TCP2-like isoform X1
TrEMBLA0A067L0H71e-159A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGLus100385120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2