PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038607
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 181aa    MW: 19972.6 Da    PI: 5.6386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038607genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18655255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a++ l++
  Lus10038607  6 VYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALTLKK 55
                 7*****998.**********843...6**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-13654IPR001471AP2/ERF domain
SMARTSM003801.5E-29671IPR001471AP2/ERF domain
PROSITE profilePS5103222.181665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28667IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-19665IPR016177DNA-binding domain
CDDcd000182.85E-27766No hitNo description
PRINTSPR003673.4E-10718IPR001471AP2/ERF domain
PRINTSPR003673.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKAKKVYRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTPE MAARAHDVAA LTLKKGNYSS  60
ILNFPEMAHS LPRPLSLAPR HVQAAAAKAA HMDMTTTTSG PTTAINLAPS SLSSSSADHE  120
EEGLLSEIVE LPCLGDVRDD QKNNELVLVD SSAEGWLLYP PPWDDDDDEF GGDIVPFWEK  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-147651572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038607
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136219.12e-55PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9LYD31e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0LHV35e-54A0A0A0LHV3_CUCSA; AP2 domain class transcription factor
STRINGLus100386071e-130(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]