PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038629

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

FAR1

Protein Properties

Length: 192aa MW: 21767.8 Da PI: 9.092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038629	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.5	3.7e-07	50	131	7	85
FAR1 7 AkevGFsvrkskskkskrngeitkrtf.vCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleH 85 A ++GF+v+k + +k+ +ge++kr + vC+ gk+++++++ + +t+++t + ++++kv ++ + +w++ ++ +H Lus10038629 50 ALSLGFEVVKGSYQKN--HGEVKKRMYmVCKHGGKAKSQSTT-SPLGSTKMTTTFKSDCMFKVVLRAipvgvTWRWMIVRVMDKH 131 7899*******98887..666666655278888888887777.665556666655555555555544447667889999999666 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSDAGTDGDG TVQWERDDEE EEEMDYSKFF ENRVLYETRE AAGDAAKDIA LSLGFEVVKG 60 SYQKNHGEVK KRMYMVCKHG GKAKSQSTTS PLGSTKMTTT FKSDCMFKVV LRAIPVGVTW 120 RWMIVRVMDK HKPGQWRGFH NHKLEAFRVG TGQRNQLTDE MKQMIRQMAS TGLTTTSSIK 180 GGWEITCRYP Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10038629

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10038629	1e-142	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13554	2	4

Link Out ? help Back to Top
Phytozome	Lus10038629