PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038735

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 240aa MW: 26256.5 Da PI: 8.0272

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038735	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.9e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk il++m+vkgLtl h+kSHLQkYR+ Lus10038735 35 KPRLRWTADLHDRFVDAVTQLGGPNKATPKGILRTMNVKGLTLFHLKSHLQKYRM 89 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.634	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	32	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-16	35	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-7	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-13	131	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MQNPVGHYGR RLGYGGGVGG GGEYPGEVVL TSDPKPRLRW TADLHDRFVD AVTQLGGPNK 60 ATPKGILRTM NVKGLTLFHL KSHLQKYRMG KQLVGKDHMG GDSTKDDDGL AELPRASPDT 120 AASDDVNEGY QVKEALRAQM EVQSKLHLQV VAEKHLRIRQ EAERRYLAML DQACKLLANQ 180 FITESMSLNT NTNFSSVNHP AAIGSSIQHQ GTDCSTESCL TSSHGTESAR ISCWREDRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10038735

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373552.1	2e-80	protein PHR1-LIKE 3 isoform X1
Swissprot	Q94A57	1e-53	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5FM90	4e-79	U5FM90_POPTR; G2-like family protein
STRING	Lus10038735	1e-180	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	9e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10038735

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]