PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038846
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 424aa    MW: 46561.8 Da    PI: 9.4265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038846genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.1e-1259103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Lus10038846  59 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 103
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129413.75854108IPR017930Myb domain
TIGRFAMsTIGR015573.5E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.7E-657109IPR009057Homeodomain-like
SMARTSM007179.6E-1058106IPR001005SANT/Myb domain
PfamPF002499.1E-1059103IPR001005SANT/Myb domain
CDDcd001672.31E-761104No hitNo description
PfamPF035011.6E-42263354IPR005326Plectin/S10, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVSNNPNPTE GFYLDPNGMA LPGLGPFATS PTAAAAASNS SADDLSKKIR KPYTITKSRE  60
SWTEPEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA QKYFLKVQKS GTGEHLPPPR  120
PKRKAAHPYP QKASKSAVAA VLPQSSGSIQ SPSALLEATV PPDSPSMPVN PVISAPVSLS  180
NQGKVPSLSN NSCSSTESTP KTKQTGEMAE QGNMFRGSVF DPDATDHLPK LKKMDPIDVE  240
TVLLLMRNLS INLTSPDFED HIISEKNRRE ISKYLFQEGV CYAKKDFNLA KHPDIDVPNL  300
QVIKLMQSFK SKEYVCETFA WMHYYWYLTN EGIEFLRTYL NLPSEIVPAT LKKSAKPMGG  360
PQGDRPRGPP RSDGDRPRFG DRDGYRSGPR GGGDFGSEKG GAPAEFQPSF RVISFFVSNG  420
PLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BK9e-76262411215740S ribosomal protein S10E
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038846
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513646.11e-126protein REVEILLE 6
SwissprotQ8H0W35e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2P5FGQ10.0A0A2P5FGQ1_TREOI; GAMYB transcription factor
STRINGLus100388460.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.15e-78MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]