PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038874
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 268aa    MW: 29025 Da    PI: 4.6418
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038874genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.31.5e-252987260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y++++d++++++isw+++g+sfvv++++ fa+++Lp++Fkh+nf+SFvRQLn+Y
   Lus10038874 29 FLTKTYQLVDDSAIDDVISWTDDGSSFVVWNPTVFARDILPQHFKHNNFSSFVRQLNTY 87
                  9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-2720115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-2625160IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.83E-242687IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2229106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-142952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-146779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-148092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.8E-4133163No hitNo description
CDDcd146860.00128134159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPPPTPDQTG EAGGVTPQLE SQKSLPTPFL TKTYQLVDDS AIDDVISWTD DGSSFVVWNP  60
TVFARDILPQ HFKHNNFSSF VRQLNTYAEA SSSCGGSIGF SRCNRALISP SNSGEEQVGS  120
ATSNSPSRFG TAAEQLQDEN ERLRRENAQL NKELVEMKRL CNNIFSLVSS YSSISDTNHQ  180
PPAAAAMLDL MPPAKEEGSQ GTSSGARIFG VAIGAKKRER EGGEEDESTE LQLQPPGSEE  240
VVKSEPAEAT ATPWMKQCHR SNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-1629102782HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-1629102782HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038874
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038632.21e-83PREDICTED: heat stress transcription factor B-2a
TrEMBLA0A061G1759e-83A0A061G175_THECC; Heat shock transcription factor B2A, putative
STRINGLus100388740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-51heat shock transcription factor B2A