PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038877
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36275.9 Da    PI: 9.595
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038877genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-18863156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +rk +++t+ q++eLe++F k+r+p+ ++  eL+k+lg++ +qVk+WFqNrR+++k
  Lus10038877  8 KRKYHRHTELQINELESVFLKCRHPNDKKHNELSKRLGMDIQQVKYWFQNRRTQKK 63
                 79999************************************************988 PP
2START29.22.1e-1023531744116
                  CEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEE CS
        START  44 sgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyir 116
                    ea ras +v m+  +lv  l+d + +W+e ++    k +t++ +s+g      g+lq+m ae+qa+sp+   R + f+R  +
  Lus10038877 235 AREATRASDIVVMDGLTLVDLLMDAN-RWTEAFTglvgKGATIDMVSQGvdgtkdGTLQTMRAEFQAISPMILvRHSKFLRLLQ 317
                  56899*********************.********************************************9999999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-17371IPR009057Homeodomain-like
SuperFamilySSF466896.68E-17469IPR009057Homeodomain-like
PROSITE profilePS5007115.888565IPR001356Homeobox domain
SMARTSM003899.5E-14769IPR001356Homeobox domain
CDDcd000861.51E-14865No hitNo description
PfamPF000465.4E-16863IPR001356Homeobox domain
PROSITE profilePS5084811.372183320IPR002913START domain
PfamPF018521.1E-5235317IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAQQPTKKRK YHRHTELQIN ELESVFLKCR HPNDKKHNEL SKRLGMDIQQ VKYWFQNRRT  60
QKKAQLERHE NTLPREDIDK LKAENYLMRT RLANPICQHC SGAAMIPTTP ISLEQQRLRL  120
ENIRLKEEIN RVCSLANKVL GRNFISSLAS TSPIVAPLSF DPTIGQSNMV GGLDLGILPN  180
STTSHDKSMY KEFAVLAMDE LMKIDGLSHL REVLNLEEYG RIAVPSLMRR PDGLAREATR  240
ASDIVVMDGL TLVDLLMDAN RWTEAFTGLV GKGATIDMVS QGVDGTKDGT LQTMRAEFQA  300
ISPMILVRHS KFLRLLQEAS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038877
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9HWB21e-89A0A2N9HWB2_FAGSY; Uncharacterized protein
STRINGLus100388770.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.23e-84HD-ZIP family protein