PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038890
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 363aa    MW: 39204.7 Da    PI: 7.3856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038890genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.3e-093455426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 + C ++ + G C yGd+C+F Hg
  Lus10038890 34 KVCTYWVQ-GNCTYGDNCRFLHG 55
                 68******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.773057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-83155IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-63256IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-63355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-73455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.5E-1556168IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-561100IPR001680WD40 repeat
SuperFamilySSF509781.19E-4862354IPR017986WD40-repeat-containing domain
PfamPF004003.0E-465100IPR001680WD40 repeat
PROSITE profilePS5008213.98468109IPR001680WD40 repeat
PROSITE profilePS5029423.7368317IPR017986WD40-repeat-containing domain
PRINTSPR003203.4E-787101IPR020472G-protein beta WD-40 repeat
PROSITE patternPS00678087101IPR019775WD40 repeat, conserved site
SMARTSM0032076140177IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-32169351IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.5E-4184221IPR001680WD40 repeat
PfamPF004000.0057188221IPR001680WD40 repeat
PROSITE profilePS5008212.915191230IPR001680WD40 repeat
PRINTSPR003203.4E-7208222IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780208222IPR019775WD40 repeat, conserved site
SMARTSM003206.8E-4224261IPR001680WD40 repeat
PfamPF004000.033226260IPR001680WD40 repeat
PRINTSPR003203.4E-7248262IPR020472G-protein beta WD-40 repeat
SMARTSM003207.8265308IPR001680WD40 repeat
SMARTSM003202.8311348IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MIRRSHRIRK CATIGGPSTW GRPGNSRVVR KTEKVCTYWV QGNCTYGDNC RFLHGWSLGE  60
SFGLLTQLEG HQKVVSGIAL PSGSDKLYTG SKDETVRVWD CQSGQCMGVI NLGGEVGCMI  120
SEGPWLFVGM PNLVKAWNLQ TNADLSLNGP VGQVYAMVVG NDLLFAGTQD SAILAWKYNA  180
GSAVFEPAAS LKGHSLAVVS LVVGANRLFS GSMDNSIKVW NLETLQCIQT LNAHTAVVMS  240
LLCWDQFLLS SSLDQTIKVW AATEGGNLEV TYTHKEEHGL LTLCGLHDLE GKPILLCSSN  300
DNTVRIYDLP SFSERSKIFS KQEIRAIQAG PAGLFFTGDG TGQVRVWNCK ADQQPAAPAT  360
AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-27553531323Tako8
6g6n_A1e-27553531323Tako8
6g6n_B1e-27553531323Tako8
6g6n_C1e-27553531323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090334.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067JEM30.0A0A067JEM3_JATCU; Uncharacterized protein
STRINGLus100388900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein