PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038939
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 273aa    MW: 31040.7 Da    PI: 6.7391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038939genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09163211455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+++Er RR +iN+++  L+ ++P +   +++ +  a +L + ++Y++sLq
  Lus10038939 163 SHSIAERVRRGKINDRLRCLQNIVPGC---YKQTMGMAVMLDEIINYVQSLQ 211
                  8**************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.10E-9157215No hitNo description
SuperFamilySSF474592.75E-16159225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.856159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6163211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-8165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAEFTADFRP SMFQIDPNTT IDHQIPQFTA INHNGFNFIT PILHSNDDQH QQSFFEFGYP  60
ETDGSFHPLH NYMDVPLDQA IVGDDHHQQF VVDHGCRKRK SLAMVDQSSS INTTDIIMSP  120
QGSDNKRKKN SSKGKRVRSN DEADQKQKGV VHVRARRGQA TDSHSIAERV RRGKINDRLR  180
CLQNIVPGCY KQTMGMAVML DEIINYVQSL QNQVEFLSMK LTAASTFYDF NAEAEDVETL  240
QRAKLQEAKE QERVMKEGYG GFSCYPSTNW SL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038939
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093020.12e-80transcription factor BEE 3
SwissprotQ8GWK71e-59BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A067J8S86e-79A0A067J8S8_JATCU; Uncharacterized protein
STRINGLus100389390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-59BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]