PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039006
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 302aa    MW: 33214.1 Da    PI: 6.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1394148155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR++iN+ ++ Lr+llP+ + + p kK+s   ++ k+ +YI  Lq
  Lus10039006  94 KKLNHNASERHRRKKINTLYSSLRSLLPQsD-HHPTKKVSIPITVSKVLKYIPTLQ 148
                  6789*************************65.899999**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1493166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.49193147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-1094152No hitNo description
PfamPF000104.6E-1194148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1394152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1099153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLAMSSTSSS TNLGRGSSSW PSNSLLLEDP LITLLPNYQL HHLIQPTTTT LFPPPPSSSS  60
SSPPPFLDVS ATAEPEHQLK GSSTSSGGTT TTVKKLNHNA SERHRRKKIN TLYSSLRSLL  120
PQSDHHPTKK VSIPITVSKV LKYIPTLQQE VETLVQKKKD LLSTIPNHNQ DFDHCYNGDD  180
DQGRSSNQKS SFSPSSSSLM SSSSTVSTSW ISEEEVMVQV SIACDDNNNN IFPTSEILLH  240
LQHSGFALLN SSSFECFHAR VFYNFHLQVE RSHGVEVVDS EALSEKLLRL YESKLGVIVH  300
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922954.15e-51transcription factor ORG2-like isoform X1
STRINGLus100390060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-36bHLH family protein