PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10039123

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 244aa MW: 26936.3 Da PI: 6.713

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10039123	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.1e-33	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk il++m+vkgLtl h+kSHLQkYR+ Lus10039123 39 KPRLRWTADLHDRFVDAVTQLGGPNKATPKGILRTMNVKGLTLFHLKSHLQKYRM 93 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.634	36	96	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-31	36	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	39	94	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.33E-16	39	93	IPR009057	Homeodomain-like
Pfam	PF00249	9.2E-7	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	6.4E-12	135	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MFQDYEMQNP VYGRRLGYGG AVVGGGEYPG EVVLTSDPKP RLRWTADLHD RFVDAVTQLG 60 GPNKATPKGI LRTMNVKGLT LFHLKSHLQK YRMGKQLVGK DHMGGDSTKD DDGLVELPQA 120 SPDTTVSDDV NEGYQVKEAL RAQMEVQSKL YLQVVAEKHL RIRQEAECRY LAMLDQACKL 180 LANQFITESM SLNTNTNFSS VSHPATIGGS IQHQGTDCST ESCLTSSHGT ESARISCWRE 240 DRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10039123

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082211.1	4e-78	protein PHR1-LIKE 3 isoform X1
TrEMBL	A0A067K9Q2	9e-77	A0A067K9Q2_JATCU; Uncharacterized protein
STRING	Lus10039123	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	8e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10039123