PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039134
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 370aa    MW: 41463 Da    PI: 5.0748
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039134genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.53.2e-31471752102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........................ CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........................ 74 
                   Fl+k+ye++ed++++ ++swse  nsf+v+d+++f++++Lp+yFkh+nf+SFvRQLn+Y  +++ +++ +  s                        
   Lus10039134  47 FLRKTYEMVEDPSTDAVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFVRQLNTYVSNSSMNPSPSL-Slqrcwlpwvdsnvamlegfgsvep 142
                   9**********************************************************999888888764.3489********9999999998887 PP

                   .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  75 .....kekiweFkhksFkkgkkellekikrkks 102
                        +++ weF ++ F  g+++ll++i+r+++
   Lus10039134 143 gfrkvDPDRWEFGNEGFLGGQRHLLKTIRRRRH 175
                   7765449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-4643173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.0E-3543173IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.63E-2943112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2747173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-154770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-158597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-1598110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.63E-29140173IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEGVVVVKDE QFDSGSSDMP SPASSSSSSS FRPQPMERLH EVGPPPFLRK TYEMVEDPST  60
DAVVSWSEAR NSFIVWDSHK FSTTLLPRYF KHNNFSSFVR QLNTYVSNSS MNPSPSLSLQ  120
RCWLPWVDSN VAMLEGFGSV EPGFRKVDPD RWEFGNEGFL GGQRHLLKTI RRRRHHSSAG  180
GGNSNCSSKV AELGTNYSQN MDEEIEKLKN ERNSLMAEIV RIRQQQHHSR DQIDAMEDRL  240
VRTEKKQHQM LTFLAKAIKN PDFVQQLSLR NNDAAAAGRK RRLVSSICSD KLTETISCVV  300
DDHHHAETTA VDAAAAETIW EELELFNDDQ NNDVGVVDGG GGGGVEDWSD VDVQDLVDQM  360
GFLRSEPLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-194517318120Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039134
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462142.11e-104PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_012462143.11e-104PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_012462144.11e-104PREDICTED: heat shock factor protein HSF30 isoform X1
TrEMBLA0A0D2SI861e-103A0A0D2SI86_GOSRA; Uncharacterized protein
STRINGLus100391340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-84heat shock transcription factor A2