PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039376
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 374aa    MW: 42349.5 Da    PI: 4.8831
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039376genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.4e-36451372103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei+ed+ +++++sws+ +nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i+
   Lus10039376  45 FLSKTYEIVEDSGTNDIVSWSSGNNSFVVWDPQAFSLTLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKLIR 132
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Lus10039376 133 RRKTT 137
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3839128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.24E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.25.40.906.5E-4162245IPR008942ENTH/VHS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMNNPRGRNS CGSTSSSSSG GRGRGGEAPV PQPVEGLHEM GPPPFLSKTY EIVEDSGTND  60
IVSWSSGNNS FVVWDPQAFS LTLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLKL IRRRKTTQPT TQSTLVDPCV EVGTFGIESE LEQLRRDKQV LMMELVKLRQ  180
QQQTTKECLQ MLEQRLRRNE AKQQQMMTFL ARAVKNPDFL QQLVHQKGIM RELENAITKK  240
RRRRPIDQAA IHINVEAGDP SFVKIEPADQ EYFGRVNDDD IAELDSLALD IQAGLGGFSA  300
TRRIENFEEE GGIEVDHDGR KIINDHEGYL WEHLLDDEIG IEMGLNMGHE DGDDDGNVDV  360
LVEQLGFLDS DIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-234313718123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263651e-33BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636783.11e-135heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9RTK11e-132B9RTK1_RICCO; Heat shock factor protein HSF30, putative
STRINGLus100393760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B