PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039427
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family FAR1
Protein Properties Length: 291aa    MW: 33018.5 Da    PI: 10.0311
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039427genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1241.3e-07699789
         FAR1  7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.........leHnHel 89
                 A  +GF++++ ++kk+ r++  ++  ++Cs  g+   ++++t++++rt++++ t+C+ ++ v+ +    + kw++++++         + HnH++
  Lus10039427  6 ALGLGFQLTRGSHKKNPREE-EKRLYLYCSHGGRGPLQSTTTSESSRTTTTSFTSCTFMVCVRPTFvdaEWKWKIDTVKddvkrgtfrSFHNHHF 99
                 6779**********995555.6888999*************9*********************99886677899999987777777777788876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAKDIALGLG FQLTRGSHKK NPREEEKRLY LYCSHGGRGP LQSTTTSESS RTTTTSFTSC  60
TFMVCVRPTF VDAEWKWKID TVKDDVKRGT FRSFHNHHFE LWREGTQQRN QLTDKMKDHI  120
RQLEENHVPP RQMQSILNNE YGRRINIRQI YNETGKIRLS RLGNMNPMQW AVTEARKLGY  180
FMKYIKDFND HVSHLYVSHA ESASTKVGRT HTMNVQLVKD VVVVRELSEV VVDCDGPPTV  240
SCVGRHVDGL FTSVPAAAAG AAGGGGDKFE RFFKGSFGMK HNCSSKFRVL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100394270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1355424