PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039639
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 338aa    MW: 38163 Da    PI: 7.8945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039639genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13165211455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Lus10039639 165 DHIMAERKRREKLSQRFIALSSIVPGL-----KKMDKASVLGDAIKYVKHLQ 211
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-18165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12166215No hitNo description
SMARTSM003534.7E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEDYKFFQHC DTINSEFEQN TVAAAALLPG EALQPSFSSE SYSSYSAGFH RQSTAPNTLT  60
PPPAAISRSS INETSQTKTF DDHRPKRQQR KTNSWTSSVT TEHQQHIDFS SNPNPQMFFR  120
QLQIHHFLSS AFLQERLRAN KPLPTLKITS WLSSSLTRTP YHAQDHIMAE RKRREKLSQR  180
FIALSSIVPG LKKMDKASVL GDAIKYVKHL QEKIKQLEEQ TKKRTVESVV LVKRCQLPMD  240
EDSNSSSCED DNNNSSKGEK KGCWDSTLPE IEAKASERDV MIRIHCEKQP GVVAKLLYEV  300
ESLNLSILNS SVLPFGNTTV DITVIAQLCI VAYEEKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13165220863Transcription factor MYC2
5gnj_B7e-13165220863Transcription factor MYC2
5gnj_E7e-13165220863Transcription factor MYC2
5gnj_F7e-13165220863Transcription factor MYC2
5gnj_G7e-13165220863Transcription factor MYC2
5gnj_I7e-13165220863Transcription factor MYC2
5gnj_M7e-13165220863Transcription factor MYC2
5gnj_N7e-13165220863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039639
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179628.15e-82transcription factor bHLH18-like
RefseqXP_024179629.15e-82transcription factor bHLH18-like
RefseqXP_024179631.15e-82transcription factor bHLH18-like
RefseqXP_024179632.15e-82transcription factor bHLH18-like
SwissprotQ9T0724e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P6RPI11e-80A0A2P6RPI1_ROSCH; Putative transcription factor bHLH family
STRINGLus100396390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-45bHLH family protein