PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039640
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 386aa    MW: 43257.2 Da    PI: 7.1396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039640genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13172218455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ + f  L  l+P +     kK +Ka++L  A++YIk+Lq
  Lus10039640 172 DHVIAERKRREKLSQHFIALSALVPGL-----KKTDKASVLGDATKYIKHLQ 218
                  5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17173242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-13173222No hitNo description
SMARTSM003536.8E-15174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDPTMTWEG EYHQIIQNPF GYPHQDDFSF EHYPLMHDRC LMNGRNETNS AYNNPYTSVV  60
DSIASLGIRS PTTTTTTSAA THHHISTEFN GAETHLHSKP SHPPPISSSS SSSSSNCMIS  120
FGNPPSPNTT SHEQQLCYYD CLNSETSNND GSVGGFDGRR PISNRRPPHG QDHVIAERKR  180
REKLSQHFIA LSALVPGLKK TDKASVLGDA TKYIKHLQER VKSLEKQTRC SHNKTVEMVH  240
YYVNRSQVLC MEDAACNSPS TNEENWKGRI LCSNNNDDIN NPSSSSCWSR GTLPEIEARV  300
CDEEVMIRIH CERQKGSSSL AKLMSEIEKH QLNVVNTSVL PFGTSLLDIT VLAHHHHLQG  360
MQMESGYMSS RMRHLVKTLQ RVIVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100396400.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-43bHLH family protein