PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039644
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25106.4 Da    PI: 11.0668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039644genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18163218257
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  rk+ ++tk+q   Le  F+ +++++ ++++ LA++lgL  rqV vWFqNrRa++++
  Lus10039644 163 RKKLRLTKDQSALLEGSFKHHSTLNPKQKQALARQLGLRARQVEVWFQNRRARRRR 218
                  788899************************************************97 PP
2HD-ZIP_I/II751.4e-24163221159
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkql 59 
                  +kk+rl+k+q++lLE sF+++++L+p++K++lar+Lgl++rqv+vWFqnrRAR + ++ 
  Lus10039644 163 RKKLRLTKDQSALLEGSFKHHSTLNPKQKQALARQLGLRARQVEVWFQNRRARRRRRKR 221
                  69***************************************************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17148213IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18155221IPR009057Homeodomain-like
PROSITE profilePS5007117.589159219IPR001356Homeobox domain
SMARTSM003896.3E-16161223IPR001356Homeobox domain
PfamPF000463.9E-16163218IPR001356Homeobox domain
CDDcd000866.61E-12163211No hitNo description
PRINTSPR000319.2E-6190199IPR000047Helix-turn-helix motif
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
PRINTSPR000319.2E-6199215IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMASSSSSSV DDHALLLGLT LSTSHHHHLP PPPISHHVTA VTKPNNNATD EPSLSLSLLS  60
SSIIVAPDQS NKTATTTTTV TAHASAAAVV IVKKDSCAAE DHQRRQASPP LSAVSSFSAS  120
GGNKVVVMKR ERDLSMSTTE EMEADQRRNS DLDDDVDAAG SARKKLRLTK DQSALLEGSF  180
KHHSTLNPKQ KQALARQLGL RARQVEVWFQ NRRARRRRRK RKKKKKKEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211218RRARRRRR
2212222RARRRRRKRKK
3215221RRRRKRK
4218222RKRKK
5218226RKRKKKKKK
6219227KRKKKKKKE
7220226RKKKKKK
8220227RKKKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890508.16e-37homeobox-leucine zipper protein HAT22-like
STRINGLus100396441e-165(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-28homeobox from Arabidopsis thaliana