PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039667
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 826aa    MW: 89026.4 Da    PI: 6.7274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039667genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20139194156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Lus10039667 139 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 194
                  688999***********************************************999 PP
2START213.95.7e-673375581206
                  HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  ela ++++e+v++a+ +ep+W+          +n+de++++f+++ +     +++ea+r+++vv+m++++lve l+d++ qW   +     +a+tlev
  Lus10039667 337 ELAVATMEEVVRMAQMGEPLWMANGldgsdPVLNEDEYVRTFPRGIGpkpngFKSEASRETAVVIMNHVNLVEYLMDVN-QWAGLFSgivsRAMTLEV 433
                  578999****************9999999999************999********************************.99999988898******* PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  +s+g      galq+m+aelq+++plvp R+++f+Ry++q+++g+w++vdvS+d  ++ p    v+R++++pSg+li++++ng+skvtw+ehv++++r
  Lus10039667 434 LSTGvagnynGALQVMTAELQLPTPLVPtRESYFARYCKQHPDGTWAVVDVSLDDLRPSP----VARCRKRPSGCLIQEMPNGYSKVTWIEHVEVDDR 527
                  **********************************************************98....7********************************* PP

                  XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                   +h+l++++v+sg+a+gak+wvatl+rqce+
  Lus10039667 528 GVHNLYKQIVSSGHAFGAKRWVATLDRQCER 558
                  *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23119194IPR009057Homeodomain-like
SuperFamilySSF466891.13E-19125196IPR009057Homeodomain-like
PROSITE profilePS5007116.925136196IPR001356Homeobox domain
SMARTSM003892.9E-19137200IPR001356Homeobox domain
PfamPF000464.8E-18139194IPR001356Homeobox domain
CDDcd000863.13E-19139197No hitNo description
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PROSITE profilePS5084842.981328561IPR002913START domain
SuperFamilySSF559616.73E-33330560No hitNo description
CDDcd088751.71E-125332557No hitNo description
SMARTSM002343.1E-61337558IPR002913START domain
PfamPF018521.4E-55338558IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-5432552IPR023393START-like domain
SuperFamilySSF559611.79E-22577812No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MPAGVMVPAR NMASSAAILR SNGGTGTSSS SSVVGLGGFG SSTTLPILGQ HDGRRRRDRR  60
RRRRXXXGGG HHHHHHHHQL QYLHLDMMTH HATPESNDFP GGGEFDISGN TKSGGSDNQD  120
GGGGSGDDQE QQQQPPNKKK RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL  180
QVKFWFQNKR TQMKTQHERL ENNQLRSEND KLRADNIRYR EALTNTSCPN CGGPTAVGEM  240
SFDEHHLRLE NARLREEIDR ISAIAAKYVG KPVVNFPLLS SPMAPRPVEL GVGNFGGGEH  300
QPAAAGGGGV DMYGGGAGDL LRSISGPAEA DKPIIIELAV ATMEEVVRMA QMGEPLWMAN  360
GLDGSDPVLN EDEYVRTFPR GIGPKPNGFK SEASRETAVV IMNHVNLVEY LMDVNQWAGL  420
FSGIVSRAMT LEVLSTGVAG NYNGALQVMT AELQLPTPLV PTRESYFARY CKQHPDGTWA  480
VVDVSLDDLR PSPVARCRKR PSGCLIQEMP NGYSKVTWIE HVEVDDRGVH NLYKQIVSSG  540
HAFGAKRWVA TLDRQCERLA SAMATNIPTN DVGVITNQEG RKSMMKLAER MVVSFCAGVS  600
ASTAHTWTTL SGTGADDVRV MTRKSIDDPG RPPGIVLSAA TSFWIPVAPK RVFDFLRDEN  660
SRNEWDILSN GGAVQEMAHI ANGRDTGNCV SLLRVNSANS SQGNMLILQE SCTDQTASFV  720
IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGNAGGE AGGGGEVGAG GGGSLLTVAF  780
QILVDSVPTA KLSLGSVATV NSLIACTVER IKAALSCENA ASANL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15562RRDRRRRR
25563RRDRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039667
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577880.10.0homeobox-leucine zipper protein HDG2 isoform X4
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A067JPN90.0A0A067JPN9_JATCU; Uncharacterized protein
STRINGLus100396670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2