PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039771
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 223aa    MW: 25419.5 Da    PI: 5.9545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039771genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv+++ ++G ++W++ +++ g+ R++k+c++rw++yl
      Lus10039771 14 KGTWTPEEDMRLVEYISRYGCRNWRRLPKEAGLARCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding48.61.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E+  ++ +++ lG++ W+ Ia +m  gRt++++k++w+++l
      Lus10039771  67 RGGFTKDEEATILSLHATLGNK-WSIIATHMS-GRTDNEIKNYWNTHL 112
                      788*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.688961IPR017930Myb domain
SuperFamilySSF466891.87E-2911108IPR009057Homeodomain-like
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002499.8E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-241568IPR009057Homeodomain-like
CDDcd001673.96E-111661No hitNo description
PROSITE profilePS5129424.15262116IPR017930Myb domain
SMARTSM007172.4E-1466114IPR001005SANT/Myb domain
PfamPF002495.7E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2569114IPR009057Homeodomain-like
CDDcd001672.79E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARTPYVDRN GLKKGTWTPE EDMRLVEYIS RYGCRNWRRL PKEAGLARCG KSCRLRWLNY  60
LRPDIKRGGF TKDEEATILS LHATLGNKWS IIATHMSGRT DNEIKNYWNT HLKKLQPPVL  120
QKEAMCSNFD AADDHHSPDQ QISVGSNASS ETSCVAAEAM PIITSVVAGN EEILISDDFW  180
SQPFMTYGED IDQNEAYGTS SDGFQTEREM LWFYHALMNY SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27121145106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039771
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889531.14e-62transcription factor MYB14-like
SwissprotQ9S9Z26e-56MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2I4DQG32e-58A0A2I4DQG3_JUGRE; protein ODORANT1-like
STRINGLus100397711e-169(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-58myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]