PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039841
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 314aa    MW: 34282.1 Da    PI: 9.2123
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039841genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.43e-07252294343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W+  Ed  l++a k ++++   +W++Ia+ ++ g++   c  r
      Lus10039841 252 TWSSVEDIALLNALKAFPKEvamRWEKIAAAVP-GKSKAACMKR 294
                      7********************************.*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.122155196IPR017877Myb-like domain
SMARTSM007172.6159212IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-5161199IPR009057Homeodomain-like
PROSITE profilePS500906.574245299IPR017877Myb-like domain
SMARTSM007174.5E-5249301IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-8250296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-5252294IPR009057Homeodomain-like
PfamPF002497.0E-6252294IPR001005SANT/Myb domain
CDDcd001673.48E-6252294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEFLDEDARP RVVFQSRPVI PSSPSDPLAE QSKPYNKLFL AVTITLSSLL IALSIYFIAN  60
EPYQSLAIWL SLSLLIGPIA PSHITGGDIR VGQGPVLEPL DPEPEIATTE KRSLKRRLKP  120
VRSDEAIANQ TSPMVNGSST NGSSRKQEFK KGVEKESEEE KEWSEEDYVI LKKQMAKNPV  180
GKPKRWEVIA DAFNGRHKVE SVIKAAKDMG EKRSDDGDSY AKFLKNRKPV DSRVDEAAEG  240
TAEAEAAASP DTWSSVEDIA LLNALKAFPK EVAMRWEKIA AAVPGKSKAA CMKRVSELKK  300
GFRSSKAGGG ASN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117KRSLKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039841
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528771.11e-122transcription factor MAMYB
RefseqXP_015580605.11e-122transcription factor MAMYB
SwissprotQ9ASQ24e-80MAMYB_ARATH; Transcription factor MAMYB
TrEMBLB9SS021e-120B9SS02_RICCO; DNA binding protein, putative
STRINGLus100398410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-73MYB_related family protein