PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039857
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 217aa    MW: 23448.3 Da    PI: 9.8705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039857genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-202170255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a++ ++g
  Lus10039857 21 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAARDFRG 70
                 69*******.**********8...557**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.38E-302177No hitNo description
Gene3DG3DSA:3.30.730.103.1E-322178IPR001471AP2/ERF domain
SMARTSM003808.4E-372184IPR001471AP2/ERF domain
PfamPF008476.5E-142170IPR001471AP2/ERF domain
PROSITE profilePS5103223.3932178IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-222178IPR016177DNA-binding domain
PRINTSPR003679.8E-122233IPR001471AP2/ERF domain
PRINTSPR003679.8E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAPQAAKETK ATKSSSEVEM HYRGVRKRPW GRYAAEIRDP GKKTRVWLGT FDTAEEAARA  60
YDKAARDFRG NKAKTNFTLP DEIFTFKVAV DGNKQQQLPP PQLSPSYSSN VESSSPPSAA  120
RGFPSASRFP FVNQKENGGA VWLFDGILRP DLAAAARQQF SLQLGGEFKS GFGLGTGSQS  180
SESDSSSVVD CKQPPPPAAK PMELNLDLNL APPMSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212179261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212179564ATERF1
3gcc_A6e-212179564ATERF1
5wx9_A3e-2022771571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021681223.13e-48ethylene-responsive transcription factor 9-like
TrEMBLS4TAK87e-47S4TAK8_HEVBR; AP2/ERF super family protein
STRINGLus100398571e-158(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-28erf domain protein 9