PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10039902

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 245aa MW: 27709 Da PI: 7.426

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10039902	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6.1e-10	117	152	13	48
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 NR +A+rsR RK+++i eLe+ v +L+ae + L + Lus10039902 117 NRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 152 ****************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-7	106	169	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	112	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-9	112	161	No hit	No description
CDD	cd14703	1.00E-20	112	160	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-9	115	160	No hit	No description
Pfam	PF00170	1.7E-7	116	153	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MAHLPPKIPT TMLPSWPDFS SDHKLMHSPS AAVPPPSSAA NNNKPSWVDE FLDFSSSRRG 60 NHRRSVSDGS VAFLEVPMLD DGHHHRDFER FADETFTSIT IVIIPTGLWT PREILANRQS 120 AQRSRVRKLQ YISELERSVT SLQAEVSVLS PRVAFLDHQR LLLNVDNSAL KQRIAALAQD 180 KMFKDAHQEA LKREIERLRE VYHQQQQNLK NMDSNNNSSS SSGQANEQPN ITAEKEQQQQ 240 LLQV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10039902

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017431608.1	1e-84	PREDICTED: basic leucine zipper 61 isoform X3
Swissprot	F4IN23	1e-54	BZP34_ARATH; Basic leucine zipper 34
Swissprot	Q9M2K4	2e-54	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A078JAF8	2e-81	A0A078JAF8_BRANA; BnaC04g52770D protein
STRING	Lus10039902	1e-180	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21578	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-55	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10039902

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]