PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040081
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 240aa    MW: 25828.7 Da    PI: 7.6951
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040081genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.31e-123357125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL +P GA+sV+Ca+C++V
  Lus10040081 33 CSGCRNLLLFPVGATSVCCAVCNAV 57
                 ************************9 PP
2zf-LSD145.51.2e-147296125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+t+
  Lus10040081 72 CGGCHTLLMYIRGATSVQCSCCHTI 96
                 ***********************97 PP
3zf-LSD141.12.9e-13110134125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Lus10040081 110 CGNCRMLLMYEYGARSVKCAVCNFV 134
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-113060IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-93357IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-146998IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-127296IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.6E-12107137IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-12110134IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPPP PPAANGGQSQ LVCSGCRNLL LFPVGATSVC CAVCNAVTAV  60
PPPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTINLAL EANQVAHVNC GNCRMLLMYE  120
YGARSVKCAV CNFVTSVGML DKNKCFNFLQ VTSQLTHMVW PRRDISEAGS LPFGKEERNF  180
EENKLQEKVS ENVGGDSVPK GRTRADATPA VQFHRRPTSS PDRPDRLEEM QWISGWSGC*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.12e-85protein LOL1
RefseqXP_021593716.12e-85protein LOL1
RefseqXP_021593717.12e-85protein LOL1
RefseqXP_021593718.12e-85protein LOL1
SwissprotQ93ZB13e-75LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS84e-84A0A2C9UHS8_MANES; Uncharacterized protein
STRINGLus100400811e-178(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.39e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]