PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040091
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 472aa    MW: 52110.7 Da    PI: 4.4802
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040091genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.48.6e-37471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
   Lus10040091  47 FLSKTYDMVDDPASDSIVSWSSTNNSFVVWNPPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIS 134
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10040091 135 RRKP 138
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-4038131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.08E-3642136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6243136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-204770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDEAATKGDS PDTLTTSGGG GGGEEKAGGA RAAPVPMTPQ SNTPPPFLSK TYDMVDDPAS  60
DSIVSWSSTN NSFVVWNPPE FARDILPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQKHLL KSISRRKPAH GHNQQQVQPS NGQISSAASC VEVGKFGLGE EVERLKRDKN  180
VLMQELVRLK QQQQSTDGQL QTMVKRLQGM EQRQQQMMSF LAKALQSPGF FSQFVQQQNE  240
NNRRIAETNK KRRLKQDGTT KNESSTVPDG QIVKYQPSTN EAANVMFRQI MNGDAPSRSE  300
CYNNSFDGFT GGNVSSPSAM DSGNSPTRGS AVTLQEVPAT SGSGVMPELS QMPEMVPESM  360
DDDIPGDDYM EPDTGDDCFV QSSLGMDGMM PFDLGIIPPD LEDNLDAFLA RDFWDDLVQS  420
PILDDIESSS MDNKASSDDV QPMEKEWEKS EHVDQLTEQM GHLSSEAKKL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-273513614129Heat shock factor protein 1
5d5v_B4e-273513614129Heat shock factor protein 1
5d5v_D4e-273513614129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255NKKRRLKQ
2249254KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018512.10.0PREDICTED: heat stress transcription factor A-1d isoform X1
SwissprotQ9LQM71e-155HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A3N7EEZ40.0A0A3N7EEZ4_POPTR; Uncharacterized protein
STRINGLus100400910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-146heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]