PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040132
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 334aa    MW: 37059.9 Da    PI: 8.7386
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040132genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70225.24.6e-084176540
       DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40
                 + +C +CGn a+  C ++ C+ CC      C  hv 
  Lus10040132 41 KPKCIQCGNVARSRCPYQSCKSCCSKAQNPCLIHVL 76
                 568*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-54378IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATSSPAPSN ILADAAANPA TPASLQRIDG TTPKTLRGLN KPKCIQCGNV ARSRCPYQSC  60
KSCCSKAQNP CLIHVLKANA TIPDKALPSN IAQVDHQSVD LSPSTTSLRV ASLRQLSNTF  120
SQFNNVHTPR SRKPLTKKEA LAINEWRFKK LKEYRDGIAE KETEAFDRYM QNISLLGETF  180
SIKPMQGNDD AALVDPRVSE NLRKKKQRVV DEGLRKLEEM ELEGDRRPEK VKQWSDRAST  240
FNDLIEKLNK ARNEDDLKSC LEINSQLSES HGPPEAAILD NVVESQTNKS EQKASSSKAM  300
DWFSQDQLRP VDIDQETVGK INAHFTSLKI ASL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021660976.11e-118uncharacterized protein LOC110650343
TrEMBLA0A2C9UGJ51e-116A0A2C9UGJ5_MANES; Uncharacterized protein
STRINGLus100401320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76901618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.11e-78