PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040200
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-X1
Protein Properties Length: 841aa    MW: 94226.2 Da    PI: 8.4129
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040200genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1171.3e-05188206120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG H C  lCH+GpCppCp+
  Lus10040200 188 CG-HFCLLLCHPGPCPPCPK 206
                  **.***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.42E-769147No hitNo description
PROSITE patternPS01359075141IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0022188206IPR000967Zinc finger, NF-X1-type
CDDcd060084.66E-9230276No hitNo description
SMARTSM004380.036240259IPR000967Zinc finger, NF-X1-type
CDDcd060088.23E-7283327No hitNo description
SMARTSM004381.5293313IPR000967Zinc finger, NF-X1-type
CDDcd060084.85E-7338383No hitNo description
SMARTSM0043810348368IPR000967Zinc finger, NF-X1-type
CDDcd060084.13E-11382428No hitNo description
SMARTSM004380.0069390409IPR000967Zinc finger, NF-X1-type
SMARTSM0043857447468IPR000967Zinc finger, NF-X1-type
SMARTSM00438230476521IPR000967Zinc finger, NF-X1-type
SMARTSM0043850558592IPR000967Zinc finger, NF-X1-type
SMARTSM004380.06602620IPR000967Zinc finger, NF-X1-type
SMARTSM004382.7665686IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MSSAGGKQQS FTDSDSDSDH SQGESNSSLR HTDLSNSIFK SYFEHTPTAT ASPSPHDLSK  60
IQSFLNSSSS GALSCLICLE RIRPSDPTWS CPSLCFDVFH LLCIQSWARQ ASDLAAARAV  120
TRLPITSDKA SETALWNCPK CRSAYSKSQI PKSYFCFCGK LENPLNDNPW ILPHSCGEVC  180
NRPLKNNCGH FCLLLCHPGP CPPCPKLVKA SCYCGKIEDV RRCGFKVFSC NNRCNKLLEC  240
KKHKCKEICH DGECPPCHER GVYRCLCGKK QEERECCVRE FQCENPCKKE LSCGKHLCER  300
GCHSQEGCGE CPLQGKRTCP CGKRVHEGMA CDIAVPLCGD TCGKKLSCGF HRCHERCHRG  360
QCVENCRMVI SKTCRCGSLK KEVCGKKLRC KNHKCPSPCH RGPCAPCPVM VAISCFCGET  420
HFEVPCGTEM DQKPPKCRKL CEIAPLCRHA PYIKPHKCHY GTCPPCRLVC EGEYRCGHKC  480
QLRCHDSRPP PRPEFTLRPK KKRQIHQPEC TPGSPCPPCP ELVWRPCVGQ HFAAEKMMVC  540
ANKAEFSCEN LCGNPLPCGN HYCTKSCHAV KFSPSKSQGP IGTSETCEKC NLRCEKKREP  600
SCPHPCTLRC HPDDCPPCKA LVKRSCHCGS LVHAFECMYY NSLSKKEQIS VRSCGGYCHR  660
KLPNCTHLCP ETCHPGDCPS PDKCSKKVFV RCRCQTLKKE WLCKDVQAAY HKAGSDPKDV  720
SRNQFGHGLL PCNSDCKSKL QVAEQELHLR APKDVEKEKD GPTDAHPPRR RKRRQHMQEE  780
KQLSSLEKIF PALKRLVLVV VIIITLMAAS YFGYKGLMWL SDYMNEVEEQ RQGSKRYPRV  840
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1767771PRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040200
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674062.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9T5650.0B9T565_RICCO; Nuclear transcription factor, X-box binding, putative
STRINGLus100402000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors