PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040219
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 229aa    MW: 26280.3 Da    PI: 9.7598
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040219genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-203394157
                 TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++ R+++t+eq+++L +lF++  r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Lus10040219 33 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 94
                 568*****************99**************************************97 PP
2Wus_type_Homeobox113.51.1e-363396265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+
        Lus10040219 33 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 96
                       678***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.0133095IPR001356Homeobox domain
SMARTSM003893.3E-43299IPR001356Homeobox domain
PfamPF000461.1E-173494IPR001356Homeobox domain
SuperFamilySSF466891.8E-113597IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-83694IPR009057Homeodomain-like
CDDcd000865.65E-53696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAASGFCIAK ARTHLRNKTN NTPTNDQYGS GTKCGRWNPT AEQVKVLTDL FRSGLRTPST  60
DQIQKISSQL SFYGKIESKN VFYWFQNHKA RERQKRRRVS VDDNDVVFVA PPPTSHGLLR  120
RHDHFSSSAR YHHVTESFSN RRHQEQEEPA AAERVMETLQ LFPINPFHEP AVDHHHHQII  180
GGDKFKASFQ ANHHHYYYRK QDAANTGFPC GFGSEMDHPP LDLRLSFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021648231.11e-76WUSCHEL-related homeobox 5-like
TrEMBLA0A067LC761e-68A0A067LC76_JATCU; Uncharacterized protein
STRINGLus100402191e-173(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60143452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.11e-53WUSCHEL related homeobox 5