PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040225
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 159aa    MW: 17696.8 Da    PI: 11.3256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040225genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141862347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT++E+ +++++  ++G+g+W+ I+r    ++t+ q+ s+ qky
      Lus10040225 18 PWTEDEHRRFLKGLVKYGKGDWRNISRNAVVTKTPTQVASHAQKY 62
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5441067IPR017930Myb domain
SuperFamilySSF466891.15E-161268IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-191466IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-111561IPR009057Homeodomain-like
SMARTSM007178.6E-111565IPR001005SANT/Myb domain
PfamPF002491.3E-111862IPR001005SANT/Myb domain
CDDcd001677.94E-111863No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MMVGSSKSSD QGRKKGVPWT EDEHRRFLKG LVKYGKGDWR NISRNAVVTK TPTQVASHAQ  60
KYFIRQQQLS GVKDKRRPSI HDITTLNLAG NNTFSVAGKR SSSSSTTPIN WNHHHQQQYH  120
PSSSTSFFMG LSPYNPNAPS NPDVSDVFRM PVGRGIRS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036008.11e-45PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-40DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P2N0P09e-45A0A2P2N0P0_RHIMU; Uncharacterized protein
STRINGLus100402251e-114(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-44MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]