PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040274
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 166aa    MW: 18258.4 Da    PI: 5.038
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040274genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260903.1e-2829014101
       DUF260  14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                  ++Cv+apyf  +q p++f +vhk+FGasnv+kll +lp + r+da+ +++y+A ar++dP yG+v+ i++lqqq+++ ++e+++l ++l
  Lus10040274   2 QECVFAPYFSYNQaPSHFGAVHKVFGASNVSKLLLRLPVNFRSDAAITIAYQALARIQDPAYGCVAYIMALQQQVASIQQEIETLSHQL 90 
                  79*********9989********************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.511190IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-26286IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQECVFAPYF SYNQAPSHFG AVHKVFGASN VSKLLLRLPV NFRSDAAITI AYQALARIQD  60
PAYGCVAYIM ALQQQVASIQ QEIETLSHQL ALNSVTQLAS CGSLPASSAS NYETQIFQQN  120
QQSLQLDNSE HIAGSIEFDS KITSELLSLY GWEDQNPFWN SAHHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-25110723125LOB family transfactor Ramosa2.1
5ly0_B8e-25110723125LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040274
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683712.11e-56LOB domain-containing protein 33-like
SwissprotQ9LHS83e-36LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A2C9VM865e-55A0A2C9VM86_MANES; Uncharacterized protein
STRINGLus100402741e-119(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-38LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]