PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040305
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 424aa    MW: 47558.7 Da    PI: 8.5796
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040305genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.51.4e-38177235462
       zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Lus10040305 177 AALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 235
                  689*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-28170233IPR003851Zinc finger, Dof-type
PfamPF027011.7E-32178233IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.767179233IPR003851Zinc finger, Dof-type
PROSITE patternPS013610181217IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVEVHGGGGK GVDNHEKETX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK IPHPGEAALK  180
CPRCESTNTK FCYFNNYNLS QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NKRTKGGMRS  240
KSAGGGTTTT TNRVTTSLFG SSQNNLGRNS NYDLVHHQLP PTMLLPPLIS NLGGEDLNFH  300
PPPPCRDDGE SSWGGGVGPT GTSGGIVEQW RMQQEQQQFP NFFASLEQQQ NPSSVKMEGN  360
NNNNLLSRNF LGNFEDHHQD YGGQYCWPPA SGGSNIMNAW SNSGADHVLT GGFTSSASTS  420
HLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946323e-31FP094632.1 Phyllostachys edulis cDNA clone: bphylf047i12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678204.11e-43PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
STRINGLus100403050.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-36DNA binding with one finger 2.4