PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040312
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 196aa    MW: 21105.1 Da    PI: 9.8623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040312genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00124567123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ Fs+   L  H  +H
  Lus10040312 45 FECKTCNRQFSSFQALGGHRASH 67
                 89**********99999998887 PP
2zf-C2H211.60.0008899121123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  F+    L  H+r+H
  Lus10040312  99 HRCSVCGLEFPVGQALGGHMRRH 121
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.59E-94367No hitNo description
PfamPF139121.3E-114469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5564567IPR007087Zinc finger, C2H2
SMARTSM003550.24567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576673.59E-994121No hitNo description
PfamPF139121.3E-1098123IPR007087Zinc finger, C2H2
PROSITE profilePS501578.68399126IPR007087Zinc finger, C2H2
SMARTSM003550.09299121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMNMQETTGE ILNLTVANCL MMLSQQPQYD IVVSERRSSS PSRVFECKTC NRQFSSFQAL  60
GGHRASHKKH PLPTGSPGGS LEVGGHRKKQ VLPTKPKAHR CSVCGLEFPV GQALGGHMRR  120
HRAAPGLTVV ATATTFVSAG GDSSGGSEQS SESLTLQMKK ARVSSLDLNL TPYENDVKLL  180
KLGTNYNASM VDFFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027131.17e-48PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2H5NYR72e-46A0A2H5NYR7_CITUN; Uncharacterized protein
TrEMBLV4TCK32e-46V4TCK3_9ROSI; Uncharacterized protein
STRINGLus100403121e-144(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-28C2H2 family protein