PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040313

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 154aa MW: 17595.3 Da PI: 6.0054

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040313	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.8	1.7e-38	7	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrr+Ca+dCvlapyfp ++p++f++vhk+FGasn+ +ll+++p e r +a++++ +eA ar+r+PvyG+vg+i++lqq++ +++ e++ + Lus10040313 7 RCAGCKYLRRRCAQDCVLAPYFPPDNPQRFEFVHKIFGASNLARLLQEVPVESRGKAADCMSFEASARVREPVYGCVGMIHELQQEILKVQLEVENI 103 6***************************************************************************************999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.538	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-38	7	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSSIGRRCAG CKYLRRRCAQ DCVLAPYFPP DNPQRFEFVH KIFGASNLAR LLQEVPVESR 60 GKAADCMSFE ASARVREPVY GCVGMIHELQ QEILKVQLEV ENIEGMLALH RAEHQLLVMR 120 QQEEKKNMLP DYVDFGAHCN LDLEDDQFLW PLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-34	5	101	9	105	LOB family transfactor Ramosa2.1
5ly0_B	8e-34	5	101	9	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040313

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316444.3	5e-48	LOB domain-containing protein 24
Swissprot	Q8LBW3	9e-39	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2K1YZY8	8e-47	A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRING	Lus10040313	1e-111	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-41	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10040313

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]