PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040408
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 140aa    MW: 16184.7 Da    PI: 7.0233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040408genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-1041138599
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++++ l sg++++p + + eh++++  + t+tl   +g       + e+kl  +kk gr ++  GW  F+k+++L +gD+ +++l++ ++  ++v++
  Lus10040408  41 VITASQLHSGNMYFPARITHEHMNEH-FP-TVTLWVFDGeervvvDKKELKLFETKKHGRKYIC-GWIAFCKEHNLVVGDVYLLELVEPETNLFRVRI 135
                  56788888899********9996553.44.6666666665578886777777556666666665.9********************988888789999 PP

                  E-S CS
           B3  97 frk 99 
                  fr+
  Lus10040408 136 FRH 138
                  986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1531137IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-1332137IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-1436137No hitNo description
SMARTSM010191.4E-738139IPR003340B3 DNA binding domain
PfamPF023624.8E-940138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAAMHQAHDR NSRNGLPMPP EMPSPIQETL FSLENPSFLI VITASQLHSG NMYFPARITH  60
EHMNEHFPTV TLWVFDGEER VVVDKKELKL FETKKHGRKY ICGWIAFCKE HNLVVGDVYL  120
LELVEPETNL FRVRIFRHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100404081e-101(Linum usitatissimum)