PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040425
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 182aa    MW: 19592.9 Da    PI: 10.1796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040425genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000646284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C+++F++   L  H  +H
  Lus10040425 62 YECRTCNRTFPSFQALGGHRASH 84
                 99**********99999998887 PP
2zf-C2H2130.0003135157123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  F++   L  H+r+H
  Lus10040425 135 HECGQCGAEFNSGQALGGHMRRH 157
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-126186IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-86184No hitNo description
PROSITE profilePS5015710.4296289IPR007087Zinc finger, C2H2
SMARTSM003550.096284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-8130157No hitNo description
PfamPF139123.5E-12134159IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.115135162IPR007087Zinc finger, C2H2
SMARTSM003550.07135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MANCLILLAQ GNSSFFTNNH INATISSTVN NNNIANGKFT SRKFMETSGG VEGGGKVGYY  60
VYECRTCNRT FPSFQALGGH RASHKKPKNL LVTNNLFLAT APPYNDVTNF LQLSSGRGLV  120
ANNHKGNNNS YNRVHECGQC GAEFNSGQAL GGHMRRHRAP PPTITTNLSL LASNNDLRTT  180
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031622.16e-47PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1Q3CDB31e-46A0A1Q3CDB3_CEPFO; Zf-C2H2_6 domain-containing protein
STRINGLus100404251e-130(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-40C2H2 family protein