PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040447
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 235aa    MW: 25942.5 Da    PI: 5.8801
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-21109169257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l    +++e++V++WFqNrRa+ k+
  Lus10040447 109 RQRWTPTPVQLQILEQIFEQgNGTPTKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 169
                  89*****************99**************************************97 PP
2Wus_type_Homeobox102.23.7e-33109171365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
        Lus10040447 109 RQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 171
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-20103174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-18105173IPR009057Homeodomain-like
PROSITE profilePS5007115.175105170IPR001356Homeobox domain
SMARTSM003896.9E-15107174IPR001356Homeobox domain
PfamPF000462.4E-19109169IPR001356Homeobox domain
CDDcd000861.91E-14109171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEWDSAVVGA NHKRHHESCN NNNNGDPNTA NSSSSPNDLL YVKVMTDEQL ETLRKQIAVY  60
STICEQLVEM HKTLSSSSHQ DFAAAGRLGN MYLDTLMGGG GGQKMSGGRQ RWTPTPVQLQ  120
ILEQIFEQGN GTPTKQKIKE ITTELSQHGQ ISETNVYNWF QNRRARSKRK QHLTNLPTSA  180
TAGTNNNDNA GATSGDLSSE VETTTATEVD SLNDQDIIIQ LLAQSQYQEK QCWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425279.15e-74WUSCHEL-related homeobox 13 isoform X1
SwissprotQ5QMM34e-64WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A067G7G21e-73A0A067G7G2_CITSI; Uncharacterized protein
STRINGLus100404471e-175(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-59WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]