PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040696
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 308aa    MW: 33655.5 Da    PI: 9.116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040696genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-083074345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a +++ ++   +W ++a+ ++ g+t  ++++ + 
      Lus10040696 30 KWTRAENKLFENALALYDKEtpdRWQKVAALIP-GKTVGDVINQYK 74
                     8*****************99*************.********9997 PP
2Myb_DNA-binding48.22.6e-15139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Lus10040696 139 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 183
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9212681IPR017884SANT domain
SMARTSM007174.0E-82779IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-112984IPR009057Homeodomain-like
PfamPF002491.2E-62975IPR001005SANT/Myb domain
CDDcd001671.77E-73076No hitNo description
PROSITE profilePS5129420.955132188IPR017930Myb domain
SuperFamilySSF466895.46E-17134187IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18135187IPR006447Myb domain, plants
SMARTSM007172.7E-13136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-13136183IPR009057Homeodomain-like
CDDcd001671.37E-11139184No hitNo description
PfamPF002495.4E-13139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRWEMEVLSP ASYLSSTDNM LIEDGKMTTK WTRAENKLFE NALALYDKET PDRWQKVAAL  60
IPGKTVGDVI NQYKELEADV SSIEAGLIPI PGYCAASPFT LEWVSSNGFD GFKQSYGLTG  120
KRSSSGGRTP DQERKKGVPW TEEEHKLFLM GLKKYGKGDW RNISRNFVVT RTPTQVASHA  180
QKYFIRQLSG GKDKRRASIH DITTVNLNDT TRSSNSPDSS KQGSSPDQSM MGGTFQWNTH  240
HRVGGAAAGA AMAFGSTHGG NNNMFISPPY GGFNSSSYTG GVKTEGGYDE GSMVFQMQSA  300
AQSYPHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1431931173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040696
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744460.0JX174446.1 Linum usitatissimum clone LuBAC375M9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022730239.11e-137transcription factor DIVARICATA-like
SwissprotQ8S9H71e-118DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLI6YM670.0I6YM67_LINUS; Uncharacterized protein
STRINGLus100406960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-104Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]