PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040832
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21148.4 Da    PI: 10.5787
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-211156348
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 ++++s rqvtfskRr+g++KKA+EL +LC++++a+++fs+ gk + 
  Lus10040832 11 VKDSSCRQVTFSKRRTGLFKKAHELATLCAVKIAILVFSPGGKPFS 56
                 7899************************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.918161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-26279IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-19323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRRKIEMEM VKDSSCRQVT FSKRRTGLFK KAHELATLCA VKIAILVFSP GGKPFSFGSP  60
DFDGVTEKFL TQDENSNMDA YDSDNNNQTG MATNIKNRRL DLLQHQIEFE KKKMGNVKKD  120
GARSELLKSL KKMRFKELVD MKNKLMRLQR GLAGRTMEIV ASTTLMQLSE SKAAKKNYGT  180
SSSNSTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16174174MEF2C
5f28_B2e-16174174MEF2C
5f28_C2e-16174174MEF2C
5f28_D2e-16174174MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294929.11e-45agamous-like MADS-box protein AGL29
TrEMBLA0A061GKZ38e-42A0A061GKZ3_THECC; Agamous-like MADS-box protein A, putative
STRINGLus100408321e-136(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-42AGAMOUS-like 29