PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040836

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 184aa MW: 20388.4 Da PI: 10.5447

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040836	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	107.9	5e-34	94	147	2	55
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 +e lkcprC+stntkfCy+nny+l+qPr+fCk+CrryWtkG alr vP+Ggg Lus10040836 94 PEPGLKCPRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTKGVALRKVPLGGGL 147 56789***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	78	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.788	98	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-29	98	146	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHHHHH QSANQLVQHD QGGVGGGASA SYDAPPLPQH HQQHQLPPLP 60 TQQMVPHGGG AVGAASIRPG SMADRARQAK IPQPEPGLKC PRCESTNTKF CYFNNYNLTQ 120 PRHFCKTCRR YWTKGVALRK VPLGGGLAXX XXXXXXXXXX XXXXXXXARR RRGIYTVASR 180 TKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040836

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719936.1	2e-52	PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
Swissprot	O80928	3e-40	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A1U8LZE5	5e-51	A0A1U8LZE5_GOSHI; dof zinc finger protein DOF2.2-like isoform X2
STRING	Lus10040836	1e-116	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-41	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Lus10040836

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]