PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040861
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 180aa    MW: 20204.2 Da    PI: 5.3167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040861genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-17243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T++E++l v++++++G++ W++Iar+++ gRt++++k++w++++
      Lus10040861  2 TPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                     9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.65E-13143No hitNo description
SMARTSM007177.7E-12145IPR001005SANT/Myb domain
PROSITE profilePS5129425.019147IPR017930Myb domain
PfamPF002492.2E-15242IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-12247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTPQEEKLVV ELHAKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KRALSPSSPS  60
NNSSVSNTTT VDSSPFQETG DRSFYDTGGN NQVVVAAAAG KTNDSMQVGD KGYSMDDIWK  120
DIENTIEPVS SAGFNDNFSG PSIVSPPWEY NFHDTLWKLD EEESKAFLPY DYGTVFLTG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040861
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3745770.0GQ374577.1 Linum usitatissimum MYB1-1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582037.19e-76transcription factor MYB59 isoform X2
SwissprotQ9LX826e-43MYB48_ARATH; Transcription factor MYB48
TrEMBLC8CAM61e-130C8CAM6_LINUS; MYB1-1
STRINGLus100408611e-131(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.22e-43myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Huis R,Hawkins S,Neutelings G
    Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.).
    BMC Plant Biol., 2010. 10: p. 71
    [PMID:20403198]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]