PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040900
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 382aa    MW: 42771.5 Da    PI: 5.3284
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040900genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-072769339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +r C+ +++  + l+C+ ++  lC +C  e H+       Ht+
  Lus10040900 27 PRLCDYCNQSTAVLYCRADSARLCLSCDREVHSTnqlftkHTR 69
                 689******99*********************66778888875 PP
2zf-B_box30.95.8e-1072115542
     zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   C+ ++  ++++fCe+ ++ lC++C  e+H++      H+++p+
  Lus10040900  72 LCDACDASPASIFCESERSVLCQNCDWETHNNlslsslHNRRPI 115
                  6*****************************99999999999886 PP
3CCT62.21.6e-21337380144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R+ a++RYkeK+ktR+++K+irYesRKa+AesR Rv+GrF+k +
  Lus10040900 337 RDSAISRYKEKKKTRRYDKHIRYESRKARAESRTRVRGRFAKIQ 380
                  899**************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-132572IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1392572IPR000315B-box-type zinc finger
PfamPF006432.8E-62669IPR000315B-box-type zinc finger
CDDcd000211.05E-72869No hitNo description
PROSITE profilePS5011910.56668115IPR000315B-box-type zinc finger
CDDcd000217.71E-872115No hitNo description
PfamPF006437.2E-772115IPR000315B-box-type zinc finger
SMARTSM003360.004573115IPR000315B-box-type zinc finger
PfamPF062031.0E-15337378IPR010402CCT domain
PROSITE profilePS5101714.852337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSSDNTQPPM KSEEQDDGQN KLPPPPPRLC DYCNQSTAVL YCRADSARLC LSCDREVHST  60
NQLFTKHTRW LLCDACDASP ASIFCESERS VLCQNCDWET HNNLSLSSLH NRRPIEGFSD  120
CPSAGELVGF LGFEDLGVIL TKKGFREEDS LVGAVPDGSD LGDGYSDFLV WDSSPVGSFD  180
DLIVSGDSGQ NLKAMGIPPL PKNRNAACGR HKEEIIRQLR LMARLEPENG KIDPLSLFES  240
VPTEQNMVPD SNCSGSDHNL FPAYEEHLFH WHNDDEDAVN QAFISSILRT NLDEGSATLD  300
KQSKTADDED EAKPQHPART LPTFPKVAAH EINSQERDSA ISRYKEKKKT RRYDKHIRYE  360
SRKARAESRT RVRGRFAKIQ Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308222e-97EU830822.1 Linum usitatissimum clone LU0031F11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575619.11e-148zinc finger protein CONSTANS-LIKE 13
RefseqXP_015575620.11e-148zinc finger protein CONSTANS-LIKE 13
RefseqXP_015575621.11e-148zinc finger protein CONSTANS-LIKE 13
TrEMBLB9S3V91e-143B9S3V9_RICCO; Uncharacterized protein
STRINGLus100409000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.15e-97B-box type zinc finger protein with CCT domain